In the past two decades, the Amazon-exposed, tropical montane rain forests in south Ecuador experienced increasing deposition of reactive N mainly from Amazonian forest fires, episodic Ca and Mg inputs from Saharan dust, and a low but constant P deposition from unknown sources. To explore the response of this tropical, perhumid ecosystem to nutrient inputs, we established in 2007 a Nutrient Manipulation Experiment (NUMEX). Since 2008, we have applied 50 kg ha−1 year−1 of N as urea, 10 kg ha−1 year−1 of P as NaH2PO4·H2O, 50 kg ha−1 year−1 of N + 10 kg ha−1 year−1 of P and 10 kg ha−1 year−1 of Ca as CaCl2·H2O in a randomized block design at 2000 m a.s.l. in a natural forest of the south Ecuadorian Andes. Previous studies have shown that alkali and alkaline earth metals had beneficial effects on the functioning of N and P co-limited tropical forests occurring on acidic soils. Therefore, we determined the response of all major aqueous ecosystem fluxes of K, Ca, Mg and Na to nutrient amendments, to understand how increasing atmospheric deposition would affect their cycling in the future. Additions of N and P decreased K leaching from the organic layer and in the mineral soil, thus tightening K cycling. This suggests that increasing future N and P availability may result in K limitation in the long term. The leaching of Ca and Mg from the canopy increased in response to amendments of N and P and we observed an enhanced uptake of these nutrients also if Ca was amended alone. Although N was applied as urea, acidity of soil solutions and leaching of K, Ca, Mg and Na did not increase following separate N amendments. In spite of the acid soils and of its low cation-exchange competitivity, Na included in the P fertilizer was only partly leached from the organic layer. We suggest that it was probably required to cover an unmet Na demand of the soil fauna. Our results demonstrate the major role in the functioning of the tropical montane forests played by K, Ca and Mg as potential future growth-limiting elements and increasingly required nutrients in response to rising N and P availability, while they also support the importance of Na as a functional element in these ecosystems.