Laboratory for
Climatology and Remote Sensing

Abstract:

Data on the distribution of tree species are often requested by forest managers, inventory agencies, foresters as well as private and municipal forest owners. However, the automated detection of tree species based on passive remote sensing data from aerial surveys is still not sufficiently developed to achieve reliable results independent of the phenological stage, time of day, season, tree vitality and prevailing atmospheric conditions. Here, we introduce a novel tree species classification approach based on high resolution RGB image data gathered during automated UAV flights that overcomes these insufficiencies. For the classification task, a computationally lightweight convolutional neural network (CNN) was designed. We show that with the chosen CNN model architecture, average classification accuracies of 92% can be reached independently of the illumination conditions and the phenological stages of four different tree species. We also show that a minimal ground sampling density of 1.6 cm/px is needed for the classification model to be able to make use of the spatial-structural information in the data. Finally, to demonstrate the applicability of the presented approach to derive spatially explicit tree species information, a gridded product is generated that yields an average classification accuracy of 88%.

Abstract:

The Atacama Desert is considered as one of the driest places on Earth. At the coastline, however, small-scale fog oases harbor a specialized vegetation and fauna, living from moisture by fog, which is used by humans to feed water demands of industrial projects. To date, knowledge about fog and low stratus (FLS) clouds as well as their physical properties is limited in that only local observations or spatial products from satellites with coarse resolutions are available generally failing to capture local patterns resulting from the complex topography. Consequently, we provide the first climatology of FLS with 30m spatial resolution based on over 400 Landsat scenes acquired since 1986. The new product provides valuable estimates of FLS optical and micro-physical properties. FLS over the Pacific Ocean featured cloud optical depth values around 13.5 declining over land to 4.2. Effective radii were around 5.3 μm. Liquid water path was between 71.0 − gm 2 over the Ocean and 14.9 − gm 2 over land surfaces. The climatologies of the new Landsat product were successfully validated against those of the MODIS cloud property product over homogeneous surfaces. Over areas with heterogeneous topographies, the new product outperforms existing ones with coarse spatial resolutions if compared against in situ measurements. This shows the general need for cloud products with high spatial resolutions in areas where the development of small scale clouds is favored e.g., by a complex topography leading to systematical biases in existing retrievals.

Abstract:

Interest in atmosphere-surface flux modeling over the mountainous regions of the globe has increased recently, with a major focus on the prediction of water, carbon and other functional indicators in natural and disturbed conditions. However, less research has been centered on exploring energy fluxes (net radiation; sensible, latent and soil heat) and actual evapotranspiration (ETa) over the Neotropical Andean biome of the páramo. The present study assesses the implementation and parameterization of a state-of-art Land-Surface Model (LSM) for simulation of these fluxes over two representative páramo catchments of southern Ecuador. We evaluated the outputs of the LSM Community Land Model (CLM ver. 4.0) with (i) ground-level flux observations from the first (and highest) Eddy Covariance (EC) tower of the Northern Andean páramos; (ii) spatial ETa estimates from the energy balance-based model METRIC (based on Landsat imagery); and (iii) derived ETa from the closure of the water balance (WB). CLM’s energy predictions revealed a significant underestimation on net radiation, which impacts the sensible and soil heat fluxes (underestimation), and delivers a slight overestimation on latent heat flux. Modeled CLM ETa showed acceptable goodness-of-fit (Pearson R = 0.82) comparable to ETa from METRIC (R = 0.83). Contrarily, a poor performance of ETa WB was observed (R = 0.46). These findings provide solid evidence on the CLM’s accuracy for the ETa modeling, and give insights in the selection of other ETa methods. The study contributes to a better understanding of ecosystem functioning in terms of water loss through evaporative processes, and might help in the development of future LSMs’ implementations focused on climate / land use change scenarios for the páramo.

Abstract:

Coherent wind doppler lidar (CWDL) is a cost-effective way to estimate wind power potential at hub height without the need to build a meteorological tower. However, fog and low stratus (FLS) can have a negative impact on the availability of lidar measurements. Information about such reductions in wind data availability for a prospective lidar deployment site in advance is beneficial in the planning process for a measurement strategy. In this paper, we show that availability reductions by FLS can be estimated by comparing time series of lidar measurements, conducted with WindCubes v1 and v2, with time series of cloud base altitude (CBA) derived from satellite data. This enables us to compute average maps (2006–2017) of estimated availability, including FLS-induced data losses for Germany which can be used for planning purposes. These maps show that the lower mountain ranges and the Alpine regions in Germany often reach the critical data availability threshold of 80% or below. Especially during the winter time special care must be taken when using lidar in southern and central regions of Germany. If only shorter lidar campaigns are planned (3–6 months) the representativeness of weather types should be considered as well, because in individual years and under persistent weather types, lowland areas might also be temporally affected by higher rates of data losses. This is shown by different examples, e.g., during radiation fog under anticyclonic weather types.

Abstract:

In remote areas with steep topography, such as the Tropical Andes, reliable precipitation data with a high temporal resolution are scarce. Therefore, studies focusing on the diurnal properties of precipitation are hampered. In this paper, we investigated two years of data from Micro-Rain Radars (MRR) in Cuenca, Ecuador, and Huaraz, Peru, from February 2017 to January 2019. This data allowed for a detailed study on the temporal precipitation characteristics, such as event occurrences and durations at these two locations. Our results showed that the majority of precipitation events had durations of less than 3 h. In Huaraz, precipitation has a distinct annual and diurnal cycle where precipitation in the rainy season occurred predominantly in the afternoon. These annual and diurnal cycles were less pronounced at the site in Cuenca, especially due to increased nocturnal precipitation events compared to Huaraz. Furthermore, we used a fuzzy logic classification of fall velocities and rainfall intensities to distinguish different precipitation types. This classification showed that nightly precipitation at both locations was predominantly stratiform, whereas (thermally induced) convection occurred almost exclusively during the daytime hours

Abstract:

Due to the integration of fluctuating weather-dependent energy sources into the grid the importance of weather and power forecasts grows constantly. This paper describes the implementation of a short-term forecast of solar surface irradiance named SESORA (seamless sola radiation). It is based on the the optical flow of effective cloud albedo and available for Germany and parts of Europe. After the clouds are shifted by applying cloud motion vectors, solar radiation i calculated with SPECMAGIC NOW(Spectrally Resolved Mesoscale Atmospheric Global Irradianc Code), which computes the global irradiation spectrally resolved from satellite imagery. Due to the high spatial and temporal resolution of satellite measurements, solar radiation can be forecasted from 15 min up to 4 h or more with a spatial resolution of 0.05. An extensive validation of thi short-term forecast is presented in this study containing two different validations based on eithe area or stations. The results are very promising as the mean RMSE (Root Mean Square Error) of thi study equals 59W/m2 (absolute bias = 42W/m2) after 15 min, reaches its maximum of 142W/m (absolute bias = 97W/m2) after 165 min, and slowly decreases after that due to the setting of the sun After a brief description of the method itself and the method of the validation the results will be presented and discussed.

Abstract:

A new satellite-based technique for rainfall retrieval in high spatio-temporal resolution (3 km, 15 min) for Iran is presented. The algorithm is based on the infrared bands of the Meteosat Second Generation Spinning Enhanced Visible and Infrared Imager (MSG SEVIRI). Random forest models using microwave-only rainfall information of the Integrated Multi-SatEllite Retrieval for the Global Precipitation Measurement (GPM) (IMERG) product as a reference were developed to (i) delineate the rainfall area and (ii) to assign the rainfall rate. The method was validated against independent microwave-only GPM IMERG rainfall data not used for model training. Additionally, the new technique was validated against completely independent gauge station data. The validation results show a promising performance of the new rainfall retrieval technique, especially when compared to the GPM IMERG IR-only rainfall product. The standard verification scored an average Heidke Skill Score of 0.4 for rain area delineation and an average R between 0.1 and 0.7 for rainfall rate assignment, indicating uncertainties for the Lut Desert area and regions with high altitude gradients.

Abstract:

The lack of long term and well distributed precipitation observations on the Tibetan Plateau (TiP) with its complex terrain raises the need for other sources of precipitation data for this area. Satellite-based precipitation retrievals can fill those data gaps. Before precipitation rates can be retrieved from satellite imagery, the precipitating area needs to be classified properly. Here, we present a feasibility study of a precipitation area delineation scheme for the TiP based on multispectral data with data fusion from the geostationary orbit (GEO, Insat-3D and Elektro-L2) and a machine learning approach (Random Forest, RF). The GEO data are used as predictors for the RF model, extensively validated by independent GPM (Global Precipitation Measurement Mission) IMERG (Integrated Multi-satellitE Retrievals for GPM) gauge calibrated microwave (MW) best-quality precipitation estimates. To improve the RF model performance, we tested different optimization schemes. Here, we find that (1) using more precipitating pixels and reducing the amount of non-precipitating pixels during training greatly improved the classification results. The accuracy of the precipitation area delineation also benefits from (2) changing the temporal resolution into smaller segments. We particularly compared our results to the Infrared (IR) only precipitation product from GPM IMERG and found a markedly improved performance of the new multispectral product (Heidke Skill Score (HSS) of 0.19 (IR only) compared to 0.57 (new multispectral product)). Other studies with a precipitation area delineation obtained a probability of detection (POD) of 0.61, whereas our POD is comparable, with 0.56 on average. The new multispectral product performs best (worse) for precipitation rates above the 90th percentile (below the 10th percentile). Our results point to a clear strategy to improve the IMERG product in the absence of MW radiances.

Abstract:

In the Atacama Desert, cyanobacteria grow on various substrates such as soils (edaphic) and quartz or granitoid stones (lithic). Both edaphic and lithic cyanobacterial communities have been described but no comparison between both communities of the same locality has yet been undertaken. In the present study, we compared both cyanobacterial communities along a precipitation gradient ranging from the arid National Park Pan de Azúcar (PA), which resembles a large fog oasis in the Atacama Desert extending to the semiarid Santa Gracia Natural Reserve (SG) further south, as well as along a precipitation gradient within PA. Various microscopic techniques, as well as culturing and partial 16S rRNA sequencing, were applied to identify 21 cyanobacterial species; the diversity was found to decline as precipitation levels decreased. Additionally, under increasing xeric stress, lithic community species composition showed higher divergence from the surrounding edaphic community, resulting in indigenous hypolithic and chasmoendolithic cyanobacterial communities. We conclude that rain and fog water, respectively, cause contrasting trends regarding cyanobacterial species richness in the edaphic and lithic microhabitats.

Abstract:

The Atacama Desert is one of the driest and probably oldest deserts on Earth where only a few extremophile organisms are able to survive. This study investigated two terricolous and two epiphytic lichens from the fog oasis “Las Lomitas” within the National Park Pan de Azúcar which represents a refugium for a few vascular desert plants and many lichens that can thrive on fog and dew alone. Ecophysiological meas‐ urements and climate records were combined with molecular data of the mycobiont, their green algal photobionts and lichenicolous fungi to gain information about the ecology of lichens within the fog oasis. Phylogenetic and morphological investiga‐ tions led to the identification and description of the new lichen species Acarospora conafii sp. nov. as well as the lichenicolous fungi that accompanied them and revealed the trebouxioid character of all lichen photobionts. Their photosynthetic responses were compared during natural scenarios such as reactivation by high air humidity and in situ fog events to elucidate the activation strategies of this lichen community. Epiphytic lichens showed photosynthetic activity that was rapidly induced by fog and high relative air humidity whereas terricolous lichens were only activated by fog.

Abstract:

Hyperspectral remote sensing is a promising tool for a variety of applications including ecology, geology, analytical chemistry and medical research. This article presents the new hsdar package for R statistical software, which performs a variety of analysis steps taken during a typical hyperspectral remote sensing approach. The package introduces a new class for efficiently storing large hyperspectral data sets such as hyperspectral cubes within R. The package includes several important hyperspectral analysis tools such as continuum removal, normalized ratio indices and integrates two widely used radiation transfer models. In addition, the package provides methods to directly use the functionality of the caret package for machine learning tasks. Two case studies demonstrate the package’s range of functionality: First, plant leaf chlorophyll content is estimated and second, cancer in the human larynx is detected from hyperspectral data.

Abstract:

Tropical montane forests, particularly Andean rainforest, are important ecosystems for regional carbon and water cycles as well as for biological diversity and speciation. Owing to their remoteness, however, ecological key-processes are less understood as in the tropical lowlands. Remote sensing allows modeling of variables related to spatial patterns of carbon stocks and fluxes (e.g., biomass) and ecosystem functioning (e.g., functional leaf traits). However, at a landscape scale most studies conducted so far are based on airborne remote sensing data which is often available only locally and for one time-point. In contrast, multispectral satellites at moderate spectral and spatial resolutions are able to provide spatially continuous and repeated observations. Here, we investigated the effectiveness of Landsat-8 imagery in modeling tropical montane forest biomass, its productivity and selected canopy traits. Topographical, spectral and textural metrics were derived as predictors. To train and validate the models, in-situ data was sampled in 54 permanent plots in forests of southern Ecuador distributed within three study sites at 1000?m, 2000?m and 3000?m a.s.l. We used partial least squares regressions to model and map all response variables. Along the whole elevation gradient biomass and productivity models explained 31%, 43%, 69% and 63% of variance in aboveground biomass, annual wood production, fine litter production and aboveground net primary production, respectively. Regression models of canopy traits measured as community weighted means explained 62%, 78%, 65% and 65% of variance in leaf toughness, specific leaf area, foliar N concentration, and foliar P concentration, respectively. Models at single study sites hardly explained variation in aboveground biomass and the annual wood production indicating that these measures are mainly determined by the change of forest types along with elevation. In contrast, the models of fine litter production and canopy traits explained between 8%–85% in variation depending on the study site. We found spectral metrics, in particular a vegetation index using the red and the green band to provide complementary information to topographical metrics. The model performances for estimating leaf toughness, biochemical canopy traits and related fine litter production all improved when adding spectral information. Our findings therefore revealed that differences in fine litter production and canopy traits in our study area are driven by local changes in vegetation edaphically induced by topography. We conclude that Landsat-derived metrics are useful in modeling fine litter production and biochemical canopy traits, in a topographically and ecologically complex tropical montane forest.

Abstract:

Fast Fog and Low Stratus Detection (FFLSD) is a processing tool enabling detection of fog and low stratus (FLS) on very large time-series of Meteosat Second Generation data. We combine approaches for FLS detection by day and night into one homogeneous and efficient processing tool. The main unification improvements are: (1) consistent spatial tiling instead of various pixel clustering approaches, (2) uniform generation of sun and viewing angle dependent thresholds for individual tiles, (3) flexible study areas instead of area dependence, (4) parallel raster processing using the Open Computing Language (OpenCL), (5) and efficient algorithms for complex processing steps like histogram generation and analysis. As a result, users are enabled to generate products like long-term FLS climatologies with reasonable resources and short processing times. FFLSD is available as open source and allows reuse and extensions for other tasks.

Abstract:

Fog plays a major role in many ecological aspects and it influences human life in various ways. In this study, a temporally highly resolved and spatially explicit anal- ysis of variations in fog occurrence was conducted for Europe and links to general weather conditions were investigated. To this end, a high-resolution fog product based on Meteosat Second Generation data was developed. Characteristic fog distri- butions were identified by applying a Self Organizing Map approach to the dataset. It was found that the resulting fog patterns are primarily determined by terrain char- acteristics. Simultaneous occurrences between these patterns and the predominant general weather situations were analyzed. The results show that the general weather situations can be categorized into three main groups, each responsible for the forma- tion of a different group of fog patterns. Additionally, distinct regional differences could be identified in the diurnal and annual fog frequency cycles and the derived region-specific frequency variations were used to draw conclusions about the fog types prevailing in these regions.

Abstract:

The meteorological measurements in Brno, Czech Republic, is among the world's oldest measurements, operating since 1799. Like many others, station was initially installed in the city center, relocated several times, and currently operates at an airport outside the city. These geographical changes potentially bias the temperature record due to different station surroundings and varying degrees of urban heat island effects. Here, we assess the influence of land cover on spatial temperature variations in Brno, capitol of Moravia and the second largest city of the Czech Republic. We therefore use a unique dataset of half-hourly resolved measurements from 11 stations spanning a period of more than 3.5 years and apply this information to reduce relocation biases in the long-term temperature record from 1799 to the present. Regression analysis reveals a significant warming influence from nearby buildings and a cooling influence from vegetation, explaining up to 80{\%} of the spatial variability within our network. The influence is strongest during the warm season and for land cover changes between 300 and 500 m around stations. Relying on historical maps and recent satellite data, it was possible to capture the building densities surrounding the past locations of the meteorological station. Using the previously established land cover--temperature relation, the anthropogenic warming for each measurement site could be quantified and hence eliminated from the temperature record accordingly, thereby increasing the long-term warming trend.

Abstract:

With 450,000?km2Kobresia (syn. Carex) pygmaea dominated pastures in the eastern Tibetan highlands are the world's largest pastoral alpine ecosystem forming a durable turf cover at 3000–6000?m?a.s.l. Kobresia's resilience and competitiveness is based on dwarf habit, predominantly below-ground allocation of photo assimilates, mixture of seed production and clonal growth, and high genetic diversity. Kobresia growth is co-limited by livestock-mediated nutrient withdrawal and, in the drier parts of the plateau, low rainfall during the short and cold growing season. Overstocking has caused pasture degradation and soil deterioration over most parts of the Tibetan highlands and is the basis for this man-made ecosystem. Natural autocyclic processes of turf destruction and soil erosion are initiated through polygonal turf cover cracking, and accelerated by soil-dwelling endemic small mammals in the absence of predators. The major consequences of vegetation cover deterioration include the release of large amounts of C, earlier diurnal formation of clouds, and decreased surface temperatures. These effects decrease the recovery potential of Kobresia pastures and make them more vulnerable to anthropogenic pressure and climate change. Traditional migratory rangeland management was sustainable over millennia, and possibly still offers the best strategy to conserve and possibly increase C stocks in the Kobresia turf.